Centre for Biostatistics and Clinical Trials


Centre for Biostatistics and Clinical Trials - Peter Mac Cancer Centre

The role of the Centre for Biostatistics and Clinicals is to provide expert statistical, trial centre and data management support to research undertaken by the Peter MacCallum Cancer Institute and others.

Our Mission >>
Who we are >>
Our Services >>
Our Work >>
Our Funding >>
Our History >>
BaCT Services >>
Standards, Quality and Security >>
Confidentiality and Ethics >>
Business Practice >>
Research >>
Staff >>
Location >>
Useful Links >>

Our Mission
As active members of the global cancer research community, we strive for the world’s highest standards in data management, design, execution, analysis and interpretation of clinical and scientific cancer research.

Who we are
BaCT is a leading Australian centre for clinical trials in oncology. We are experts in all phases of clinical trials, specialist diagnostic trials and treatment planning studies.

We provide randomisation, statistical and trial centre support for multicentre national and international clinical trials, for trials conducted at Peter Mac in all divisions. BaCT is the trial centre for the Australasian Leukaemia and Lymphoma Group (ALLG), the Australasian Sarcoma Study Group (ASSG) and for some trials conducted by the Trans-Tasman Radiation Oncology Group (TROG). We are experts in the design, conduct, analysis and interpretation of cancer clinical trials and retrospective studies, and experienced in the analysis of other clinical and laboratory research data.

Our staff includes 5 statisticians, 2 IT specialists, 17 data managers and a management team. We also house the ALLG operations office.


Our Services
External Consultation
We provide expert analysis of clinical trials for hospitals and research centres on a contract consulting basis, and undertake analysis and specialised statistical work for institutions and pharmaceutical companies on a negotiated contract basis. BaCT is the only major unit of its kind in an Australian hospital.


Our Work [For the year ending September 2008]
BaCT staff have collaborated on over 200 published papers.

Clinical Trials
In the past year, BaCT has been involved in 119 clinical trials. In 84 of these, BaCT was the trial centre (17 phase III, 49 phase II and 18 phase I, pilot or other). The remaining 35 involved study coordination only. Ninety-three of the 119 trials were multicentre trials. All clinical trials supported by BaCT during this period were investigator-initiated.

BaCT coordinated 19 ALLG trials active or undergoing follow-up, 1 ASSG active trial and a further six ALLG trials and 1 ASSG trial in development. BaCT was also the Trial Centre for 11 (about half of all) TROG trials, one Australasian Lung Trials Group trial and one ANZ Melanoma Trials Group trial. BaCT also acts as the Australian coordinating centre for a number of trials sponsored by international cooperative cancer trials groups.

Other projects this year include retrospective studies (19), other clinical research (23), and others, including quality assurance studies (19).
CTDU (Clinical Trials Development Unit), a new joint venture between BaCT and the CTC (NHMRC Clinical Trials Centre at University of Sydney), funded by Cancer Australia, will support the concept development of new trials from collaborative oncology groups throughout Australia.

CTDU will support cancer clinical trials undertaken or coordinated by new national cancer cooperative groups.


Our Funding
BaCT receives hospital funding for in-house research projects. All other projects—those involving non-Peter Mac patients or investigators—require external funding (at a Peter Mac cost-neutral rate) to support BaCT’s involvement. This funding is provided by the investigators, who enlist BaCT’s support via project-associated grants (eg. NHMRC and Cancer Councils), Cooperative Group funds, and pharmaceutical companies. (BaCT bases its costings on a detailed project effort-logging database.)

Our History
The centre has had a long history of involvement in multi-centre clinical trials, since Dr Jane Matthews became the statistician for the newly formed Australian and New Zealand Lymphoma Group (ANZLG). This group later merged with the Australian Leukaemia Study Group (ALSG) to become the ALLG. BaCT is still playing a major role as Trial Centre for the ALLG and coordinates many TROG studies.

BaCT had its origins in 1971, when Dr Matthews was appointed as a full-time statistician at Peter Mac, with a staff of three. In 1978 the Computer and Bio-Statistical Service (COMPSTAT) was formed, with Dr Ken Koschel as Director and Dr Matthews as Deputy. Research data had been collected by staff in Medical Records but, by 1986, Peter Mac’s growing commitment to clinical research led to a distinct ‘Statistical Centre’. This gave Peter Mac’s statisticians and data managers, who had always worked closely, their own centre, with Dr Matthews as Director. She remained at the helm until 2000, when Dr Richard Fisher became Director. In 2004, the centre was renamed ‘The Centre for Biostatistics and Clinical Trials’. Our new Director is Dina Neiger, PhD.


BaCT Services
Design of clinical trials, advice on protocols, sample size and power calculations.

Statistical analysis of data from clinical and scientific studies. Comprehensive written interpretative reports.

Design of data collection forms for trials, retrospective studies, prospective databases and surveys.

Preparation of randomisation charts and computer-based patient allocation systems. Allocation designs include adaptive biased coin and urn randomisation and dynamic minimisation techniques.

Telephone registration and randomisation of patients on clinical trials.

Creation of scientific and administrative databases. Expertise in database software.
Intelligent data entry.

Site liaison during trial start up, conduct and closeout., including ethics submissions and protocol specific training.

Data collation, checking and clarification with clinicians, nurses and data managers.

Organisation of collaborative meetings and preparation of newsletters for trial investigators.
Maintenance of collaborative web sites.

Assistance with preparation of manuscripts, including detailed review of drafts, preparation of graphs, and presentation of manuscripts in a form acceptable to journals.

Advice on methods of statistical analysis and development of new methods.

Critical review of manuscripts and publications.


Standards, Quality Control and Security
Laws and regulations of the relevant countries are followed; these include the TGA Notes for Guidance on Good Clinical Practice, the NHMRC National Statement on Ethical Conduct in Human Research, Australian Code for the Responsible Conduct of Research, Medsafe New Zealand Regulatory Guidelines for Medicines and the ICH Guidelines for Good Clinical Practice.

Data entered into computer databases are independently checked using complete visual comparison or double data entry before analysis.

Comprehensive computer data checks are implemented in each database.

Data are rigorously checked by statisticians for consistency and validity prior to analysis.

New statistical software is validated by manual calculation, comparison with computer programs developed by staff or comparison with reliable software.

All statistical reports are checked by the Director or a nominee.

Trial records are securely stored within the centre, which is kept locked whenever staff are absent.

Computers are password protected and are maintained with current virus protection software.

All databases are stored on a central server and backed up by Peter Mac Information Communication Technology (ICT) staff daily.

All records relating to clinical trials are retained for 15 years.


Confidentiality and Ethics
All patient records are kept confidential, with access restricted to investigators and trial sponsors for data verification, clarification and reporting purposes.

Confidentiality is maintained for all protocols and trial documentation, with access restricted to the relevant investigators, trial group or sponsoring companies.

All clinical trials require approval from institutional ethics committees.


Business Practice
BaCT acts a business unit of Peter Mac. All money earned from external contracts is paid to the Peter Mac, not to individual staff members.

Normally work is done on a fixed-price basis with detailed written quotations submitted prior to commencement. Work can be done on an hourly basis if requested.


A Biostatistician …
  • designs and conducts clinical trials.
  • collaborates with investigators in the design and coordination of clinical studies.
  • organises and participates in meetings as required.
  • maintains good relations with investigators and other Institute personnel and external clients of BaCT.
  • analyses and interpretats data and writes reports on clinical trials and other studies.
  • collaborates with investigators in the preparation of manuscripts for publication.
  • performs statistical research.
  • keeps up to date with appropriate statistical methods and relevant literature.
  • researches statistical and methodological problems that may arise in clinical trials and publishes the results of that research.
  • educates colleagues on statistical methods as required.

A Trial Centre Data Manager …
  • collaborates in designing trials, protocols and consent forms.
  • designs case record forms.
  • devises standard operating procedure documents.
  • collaborates in designing trial databases.
  • assists in trial start-up meetings.
  • conducts trials.
  • registers and randomises patients on trials.
  • collects, checks and enters data for in-house and/or multicentre clinical trials.
  • collects data and notifies stakeholders of serious adverse events.
  • maintains trial databases.
  • liaises with data managers and clinicians at participating hospitals.and collects all essential regulatory documentation.
  • oversees compliance with trial protocols.
  • QA checks collected data for timeliness, completeness, accuracy and consistency.
  • retrieves data as part of quality assurance, analysis, or as requested.
  • prepares newsletters, manuscripts and other publications.
  • organises and attends trial group meetings and may deliver presentations.
  • collaborates with statisticians and investigators in analysis and reporting of clinical trials.



Research


Collaborative
Data Managers and statisticians collaborate with investigators from Peter Mac or from research groups who have a relationship with the Centre (especially the Australasian Leukaemia and Lymphoma Group and the Trans-Tasman Radiation Oncology Group). Centre staff have collaborated in the research and publication of a number of manuscripts.

Biostatistical
The statistical research interests of the Centre include survival analysis and clinical trial methodology. Specific interests include Phase II clinical trial design, rules for monitoring toxicity, stratification in survival studies, design issues in heterogeneous populations, exploratory data analysis, interpretation of negative trials and competing risks analysis.

Publications by the Centre for Biostatistics and Clinical Trials
2006
  • Tang, J.I., Williams, S.G., Tai, K.H., Dean, J., Duchesne, G.M. A prospective dose escalation trial of high-dose-rate brachytherapy boost for prostate cancer: Evidence of hypofractionation efficacy? Brachytherapy 2006 Oct-Dec;5(4):256-261.
  • Michael, M., Goldstein, D., Clarke, S.J., Milner, A.D., Beale, P., Friedlander, M., Mitchell, P. Prognostic factors predictive of response and survival to a modified FOLFOX regimen: importance of an increased neutrophil count. Clinical Colorectal Cancer 2006 Nov;6(4):297-304.
  • Philip, J., Gold, M., Milner, A., Di Iulio, J., Miller, B., Spruyt, O. A randomized, double-blind, crossover trial of the effect of oxygen on dyspnea in patients with advanced cancer. Journal of Pain and Symptom Management 2006 Dec;32(6):541-550.
  • Simcock, B., Neesham, D., Quinn, M., Drummond, E., Milner, A., Hicks, R.J. The impact of PET/CT in the management of recurrent ovarian cancer. Gynecologic Oncology 2006 Oct;103(1):271-276.
  • Antill, Y.C., Reynolds, J., Young, M.A., Kirk, J.A., Tucker, K.M., Bogtstra, T.L., Wong, S.S., Dudding, T.E., Di Iulio, J.L., Phillips, K.A. Screening behavior in women at increased familial risk for breast cancer. Familial Cancer 2006 Nov;5(4):359-368.
  • Grigg, A.P., Shuttleworth, P., Reynolds, J., Schwarer, A.P., Szer, J., Bradstock, K., Hui, C., Herrmann, R., Ebeling, P.R. Pamidronate reduces bone loss after allogeneic stem cell transplantation. Journal of Clinical Endocrinology and Metabolism 2006 Oct;91(10):3835-3843.

2007
  • Narayan, K., Fisher, R., Bernshaw, D. Patterns of failure and prognostic factor analyses in locally advanced cervical cancer patients staged by MRI and treated with curative intent. Int J Gynecol Cancer 2007 18 (3) 525-33.
  • Branford, S., Hughes, T., Milner, A., Koelmeyer, R., Schwarer, A., Arthur, C., Filshie, R., Moreton, S., Lynch, K., Taylor, K. Efficacy and safety of imatinib in patients with chronic myeloid leukemia and complete or near-complete cytogenetic response to interferon-α. Cancer 2007 10:801-808.
  • Dawson, S.J., Michael, M., Biagi, J., Foo, K.F., Jefford, M., Ngan, S.Y., Leong, T., Hui, A., Milner, A.D., Thomas, R.J., Zalcberg, J.R. A phase I/II trial of celecoxib with chemotherapy and radiotherapy in the treatment of patients with locally advanced oesophageal cancer. Investigational New Drugs 2007 Apr;25(2):123-129.
  • Fua, T.F., Corry, J., Milner, A.D., Cramb, J., Walsham, S.F., Peters, L.J. Intensity-modulated radiotherapy for nasopharyngeal carcinoma: Clinical correlation of dose to the pharyngo-esophageal axis and dysphagia. International Journal of Radiation Oncology, Biology, Physics 2007 Mar 15;67(4):976-981.
  • Lin, M.L., Wirth, A., Chao, M., Milner, A.D., Di Iulio, J., MacManus, M., Seymour, J.F. Radiotherapy for low-grade gastric marginal zone lymphoma: a retrospective study. Internal Medicine Journal 2007 Mar;37(3):172-180.
  • Mileshkin, L., Honemann, D., Gambell, P., Trivett, M., Hayakawa, Y., Smyth, M., Beshay, V., Ritchie, D., Simmons, P., Milner, A.D., Zeldis, J.B., Prince, H.M. Patients with multiple myeloma treated with thalidomide: evaluation of clinical parameters, cytokines,angiogenic markers, mast cells and marrow CD57+ cytotoxic T cells as predictors of outcome. Haematologica 2007 Aug;92(8):1075-1082.
  • Ng, M., Chong, J., Milner, A., MacManus, M., Wheeler, G., Wirth, A., Michael, M., Ganju, V., McKendrick, J., Ball, D. Tolerability of accelerated chest irradiation and impact on survival of prophylactic cranial irradiation in patients with limited-stage small cell lung cancer: review of a single institution's experience. Journal of Thoracic Oncology 2007 Jun;2(6):506-513.
  • Wong, L.M., Cleeve, L.K., Milner, A.D., Pitman, A.G. Malignant ureteral obstruction: outcomes after intervention. Have things changed? Journal of Urology 2007 Jul;178(1):178-183; discussion 183.
  • Connell, C.A., Corry, J., Milner, A.D., Hogg, A., Hicks, R.J., Rischin, D., Peters, L.J. Clinical impact of, and prognostic stratification by, F-18 FDG PET/CT in head and neck mucosal squamous cell carcinoma Head and Neck 2007 (To appear).
  • Grigg, A.P., Gibson, J., Bardy, P.G., Reynolds, J., Shuttleworth, P., Koelmeyer, R.L., Szer, J., Roberts, A.W., To, L.B., Kennedy, G., and Bradstock, K.F.& A prospective multicentre trial of peripheral blood stem cell sibling allografts for acute myeloid leukaemia in first complete remission using fludarabine-cyclophosphamide reduced intensity conditioning. Biology of Blood and Marrow Transplantation 2007 13(5):560-567.
  • Manoharan, A., Reynolds, J., Matthews, J., Baxter, H., Di Iulio, J., Leahy, M., Juneja, S. Flexible low intensity combination chemotherapy (FLICC) for elderly patients with acute myeloid leukaemia: A multi-centre, phase II study. Drugs and Aging 2007 24(6): 481-488.
  • Everitt, S.J., Fimmell, N., Reynolds, J., Laferlita, C., Kron, T., Ball, D. and MacManus, M.P. Inter-planner reliability in performing 3DCRT for Non Small Cell Lung Cancer (NSCLC). Australasian Radiology 2007 (To appear).
  • Mac Manus, M., D'Costa, I., Everitt, S., Andrews, J., Ackerly, T., Binns, D., Lau, E., Ball, D., Weih, L., Hicks, R.J. Comparison of CT and positron emission tomography/CT coregistered images in planning radical radiotherapy in patients with non-small-celll lung cancer. Australasian Radiology 2007 51:386-393.
  • Everitt, S.J., Schneider-Kolsky, M., Yuen, K., Budd, R., MacManus, M.P. Dose escalation of radical radiation therapy in non-small cell lung cancer (NSCLC) using PET/CT-defined target volumes - are class solutions obsolete? Australasian Radiology 2007 (To appear).

2008
  • Corry, J., Peters, L., Fisher, R., Macann, A., Jackson, M., McClure, B., Rischin, D. N2-N3 Neck Nodal Control Without Planned Neck Dissection For Clinical/Radiologic Complete Responders—Results Of Trans Tasman Radiation Oncology Group Study 98.02. Head and Neck 2008 30 (6) 737-742.
  • Davey K., Heriot A.G., Mackay J., Drummond E., Hogg A., Ngan S., Milner A.D., Hicks, R. The Impact of 18-FDG Positron Emission Tomography-Computed Tomography on the Staging and Management of Primary Rectal Cancer. Diseases of the Colon & Rectum, Volume 51 (7) July, 2008.
  • Ross DM, Grigg A. Schwarer A, Arthur C, Loftus K, Mills AK, Filshie R, Columbus R, Reynolds J, Seymour JF, Branford S, Hughes TP; The majority of chronic myeloid leukemia patients who cease Imatinib after achieving a sustained complete molecular response (CMR) remain in CMR, and any relapses occur early. Blood 112(Suppl. 1):XXXa, 2008 (Abstr. 1102)
  • Hughes TP, Branford S, White DL, Reynolds J, Koelmeyer R, Seymour JF, Taylor K, Arthur C, Schwarer A, Morton J, Cooney J, Leahy MF, Rowlings P, Catalano J, Hertzberg M, Filshie R, Mills AK, Fay K, Durrant S, Januszewicz H, Joske D, Underhill C, Dunkley S, Lynch K, Grigg A; Australasian Leukaemia and Lymphoma Group.Impact of early dose intensity on cytogenetic and molecular responses in chronic- phase CML patients receiving 600 mg/day of imatinib as initial therapy. Blood;112:3965-73, 2008
  • S. McLachlan, R. Fisher, B. McClure, J. Beresford, J. McKendrick, J. Mackay, M. Solomon, B. Burmeister, C. Hartopeanu and S. Ngan A comparison of quality of life in patients with T3 rectal cancer receiving short course versus long course preoperative radiation. A Trans-Tasman Radiation Oncology Group Trial (TROG 01.04) Journal of Clinical Oncology, 2008 ASCO Annual Meeting Proceedings (Post-Meeting Edition).Vol 26, No 15S (May 20 Supplement), 2008: 4097
  • Corry, J., Peters, L., Fisher, R., Macann, A., Jackson, M., McClure, B., Rischin, D. N2-N3 neck nodal control without planned neck dissection for clinical/radiologic complete responders-Results of Trans Tasman Radiation Oncology Group Study 98.02. Head & Neck 2008 Jun;30(6):737-742.
  • Corry, J., Poon, W., McPhee, N., Milner, A.D., Cruickshank, D., Porceddu, S.V., Rischin, D., Peters, L.J. Prospective study of percutaneous endoscopic gastrostomy (PEG) tubes versus nasogastric tubes (NGTs) for enteral feeding in head and neck cancer patients undergoing (chemo)radiation. Accepted for publication in Head Neck 2008.

2009
  • Quach H, Mileshkin L, Milner AD, Seymour J, Westerman D, Prince HM. Predicting durable remissions following thalidomide therapy for relapsed myeloma. Accepted for publication in Leukemia and Lymphoma (2009).
  • Michael M, Price T, Ngan SY, Ganju V, Strickland AH, Muller A, Khamly K, Milner AD, Dilulio J, Matera A, Zalcberg JR, Leong T.A Phase I Trial of Capecitabine + Gemcitabine with Radical Radiation for Locally Advanced Pancreatic Cancer. British Journal of Cancer (2009), Jan 13;100(1):37-43.
  • Owen R, Kron T, Foroudi F, Milner A, Cox J, Duchesne G, Cleeve L, Zhu L, Cramb J, Sparks L, Laferlita M. Comparison of CT on rails with electronic portal imaging for positioning of prostate cancer patients with implanted fiducial markers. Accepted for publication in International Journal of Radiation Oncology Biology Physics (2009).
  • Quach H, Mileshkin L, Milner AD, Seymour J, Westerman D, Prince HM. Predicting durable remissions following thalidomide therapy for relapsed myeloma. Leuk Lyphoma 2009; 50(2):223-9.



Staff


Ms Dina Neiger PhD, Director
A/Prof Richard Fisher MB, BS, PhD, Senior Biostatistician
Alvin Milner PhD, Senior Biostatistician/IT Manager
Mr Alan Herschtal BSc, BE, DipAppSc, Biostatistician
Marianne Hundling Clinical Trials Program Manager Grad Dip Clin Epi
Graeme Bird, Business Manager
Linas Silva BSc, Analyst/Programmer
Ms Jennifer Beresford MSc, Programmer Analyst/Biostatistician


Trial Centre Data Managers
Ruth Columbus PhD
Ms Linda Cowan BSc(Hons)
Ms Joanne Dean BAppSc, MPH
Ms Juliana Di Iulio BAppSc, BSc, PhD
Ms Bereha Khodr PhD
Ms Narmartha Kuru BSc(MedSci), BSc(Hons), PhD
Ms Poppy Kypreos BSc(Psych)
Ms Anetta Matera MBiochem
Ms Bev McClure BSc(Hons), Dip Comp Sc, Dip Ed, MAACB
Ms Sarah McInnes BA, BSc(Hons)
Ms Theresa Morgan PhD
Ms Cattram Nguyen BA, BSc(Hons)
Ms Christine Russell BSc(Hons)
Ms Janani Sivasuthan MSc
Ms Janey Stone
Ms Marijana Vanevski BSc(Hons)
Mr Glen Wiesner PhD


Administration
Ditas Sioco
Julie Umek, BA(Hons)

Australian Leukaemia & Lymphoma Group Operations Office
Mr David Ridler, Business Manager
Delaine Smith, Operations Manager
Megan Sanders, Protocol Development Coordinator
Ms Dilupa Uduwela, Administration & Events Officer


Location
Centre for Biostatistics and Clinical Trials (BaCT)
Level 2, No. 10 St Andrew’s Place, East Melbourne




Useful Links
Cancer Australia >>
Victorian Cancer Agency >>
Australasian Leukaemia and Lymphoma Group [ALLG] >>
Trans-Tasman Radiation Oncology Group (TROG) >>
NHMRC >>
Australasian Health & Research Data Managers' Association >>
Eastern Cooperative Oncology Group (ECOG) >>
European Organization for Research and Treatment of Cancer (EORTC) >>
FDA Centre for Drug Evaluation and Research (USA) >>
National Institutes of Health - National Cancer Institute Cancer therapeutics Evaluation Program >>
Therapeutic Goods Administration >>
World Medical Association Declaration of Helsinki - Ethical principles for medical research involving humans >>
International Conference on Harmonisation of Technical Requirements for Registration of Pharmaceuticals for Human Use - ICH Harmonised Tripartite Guideline - Guideline for Good Clinical Practice >>